Antoniewski, Christophe, and Clément Carré. 2018. “New Rules for Regulation of Genes by piRNAs in C. Elegans.” Non-Coding RNA Investigation 2: 33–33.

Beek, Marius van den, Bruno da Silva, Juliette Pouch, Mohammed El Amine Ali Chaouche, Clément Carré, and Christophe Antoniewski. 2018. “Dual-Layer Transposon Repression in Heads of Drosophila Melanogaster.” RNA 24 (12): 1749–60.

Castel, David, Meryem B. Baghdadi, Sébastien Mella, Barbara Gayraud-Morel, Virginie Marty, Jérôme Cavaillé, Christophe Antoniewski, and Shahragim Tajbakhsh. 2018. "Small-RNA Sequencing Identifies Dynamic microRNA Deregulation during Skeletal Muscle Lineage Progression". Scientific Reports 8 (1): 4208.

Carissimo G; van den Beek M; Vernick KD; Antoniewski C, 2017. Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PLoS One 12(1):e0168397

Carissimo G; Eiglmeier K; Reveillaud J; Holm I; Diallo M; Diallo D; Vantaux A; Kim S; Ménard D; Siv S; Belda E; Bischoff E; Antoniewski C; Vernick KD, 2016. Identification and Characterization of Two Novel RNA Viruses from Anopheles gambiae Species Complex Mosquitoes. PLoS One 11(5):e0153881

Hermant C; Boivin A; Teysset L; Delmarre V; Asif-Laidin A; van den Beek M; Antoniewski C; Ronsseray S, 2015. Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production. Genetics 201(4):1381-96

Molla-Herman A; Vallés AM; Ganem-Elbaz C; Antoniewski C; Huynh JR, 2015. tRNA processing defects induce replication stress and Chk2-dependent disruption of piRNA transcription. EMBO J 34(24):3009-27

Besnard-Guérin C; Jacquier C; Pidoux J; Deddouche S; Antoniewski C, 2015. The cricket paralysis virus suppressor inhibits microRNA silencing mediated by the Drosophila Argonaute-2 protein. PLoS One 10(3):e0120205

Siddle KJ; Tailleux L; Deschamps M; Loh YH; Deluen C; Gicquel B; Antoniewski C; Barreiro LB; Farinelli L; Quintana-Murci L, 2015. bacterial infection drives the expression dynamics of microRNAs and their isomiRs. PLoS Genet 11(3):e1005064

Carissimo G; Pondeville E; McFarlane M; Dietrich I; Mitri C; Bischoff E; Antoniewski C; Bourgouin C; Failloux AB; Kohl A; Vernick KD, 2015. Antiviral immunity of Anopheles gambiae is highly compartmentalized, with distinct roles for RNA interference and gut microbiota. Proc Natl Acad Sci U S A 112(2):E176-85

van den Beek M; Antoniewski C; Carré C, 2014. Isolation of small interfering RNAs using viral suppressors of RNA interference. Methods Mol Biol 1173:147-55

Antoniewski C, 2014. Computing siRNA and piRNA overlap signatures. Methods Mol Biol 1173:135-46

de Vanssay A; Bougé AL; Boivin A; Hermant C; Teysset L; Delmarre V; Antoniewski C; Ronsseray S, 2013. [Inheritance of paramutation in plants and Drosophila]. Med Sci (Paris) 29(2):136-8

de Vanssay A; Bougé AL; Boivin A; Hermant C; Teysset L; Delmarre V; Ronsseray S; Antoniewski C, 2013. Profiles of piRNA abundances at emerging or established piRNA loci are determined by local DNA sequences. RNA Biol 10(8):1233-9

Carré C; Jacquier C; Bougé AL; de Chaumont F; Besnard-Guerin C; Thomassin H; Pidoux J; Da Silva B; Chalatsi E; Zahra S; Olivo-Marin JC; Munier-Lehmann H; Antoniewski C, 2013. AutomiG, a biosensor to detect alterations in miRNA biogenesis and in small RNA silencing guided by perfect target complementarity. PLoS One 8(9):e74296

de Vanssay A; Bougé AL; Boivin A; Hermant C; Teysset L; Delmarre V; Antoniewski C; Ronsseray S, 2013. piRNAs and epigenetic conversion in Drosophila. Fly (Austin)7(4):237-41

Reinhardt A; Feuillette S; Cassar M; Callens C; Thomassin H; Birman S; Lecourtois M; Antoniewski C; Tricoire H, 2012. Lack of miRNA Misregulation at Early Pathological Stages in Drosophila Neurodegenerative Disease Models. Front Genet 3:226

de Vanssay A; Bougé AL; Boivin A; Hermant C; Teysset L; Delmarre V; Antoniewski C; Ronsseray S, 2012. Paramutation in Drosophila linked to emergence of a piRNA-producing locus. Nature 490(7418):112-5

van Mierlo JT; Bronkhorst AW; Overheul GJ; Sadanandan SA; Ekström JO; Heestermans M; Hultmark D; Antoniewski C; van Rij RP, 2012. Convergent evolution of argonaute-2 slicer antagonism in two distinct insect RNA viruses. PLoS Pathog 8(8):e1002872

Jouneau A; Ciaudo C; Sismeiro O; Brochard V; Jouneau L; Vandormael-Pournin S; Coppée JY; Zhou Q; Heard E; Antoniewski C; Cohen-Tannoudji M, 2012. Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles. RNA 18(2):253-64

Antoniewski C, 2011. Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets. Methods Mol Biol 721:123-42

Nayak A; Berry B; Tassetto M; Kunitomi M; Acevedo A; Deng C; Krutchinsky A; Gross J; Antoniewski C; Andino R, 2010. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nat Struct Mol Biol 17(5):547-54

Fagegaltier D; Bougé AL; Berry B; Poisot E; Sismeiro O; Coppée JY; Théodore L; Voinnet O; Antoniewski C, 2009. The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila. Proc Natl Acad Sci U S A 106(50):21258-63

Berry B; Deddouche S; Kirschner D; Imler JL; Antoniewski C, 2009. Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in Drosophila. PLoS One 4(6):e5866

Quach H; Barreiro LB; Laval G; Zidane N; Patin E; Kidd KK; Kidd JR; Bouchier C; Veuille M; Antoniewski C; Quintana-Murci L, 2009. Signatures of purifying and local positive selection in human miRNAs. Am J Hum Genet 84(3):316-27

Saleh MC; Tassetto M; van Rij RP; Goic B; Gausson V; Berry B; Jacquier C; Antoniewski C; Andino R, 2009. Antiviral immunity in Drosophila requires systemic RNA interference spread. Nature 458(7236):346-50